The origin of clonal diversity and structure of Populus alba in Sardinia: evidence from nuclear and plastid microsatellite markers.
Identifieur interne : 003783 ( Main/Exploration ); précédent : 003782; suivant : 003784The origin of clonal diversity and structure of Populus alba in Sardinia: evidence from nuclear and plastid microsatellite markers.
Auteurs : Giuseppe Brundu [Italie] ; Renato Lupi ; Ilaria Zapelli ; Tiziana Fossati ; Giuseppe Patrignani ; Ignazio Camarda ; Francesco Sala ; Stefano CastiglioneSource :
- Annals of botany [ 1095-8290 ] ; 2008.
Descripteurs français
- KwdFr :
- MESH :
- Wicri :
- geographic : Italie.
English descriptors
- KwdEn :
- MESH :
- geographic : Italy, Mediterranean Region.
- genetics : Cell Nucleus, Microsatellite Repeats, Plastids, Populus.
- Clone Cells, Genetic Variation, Geography, Haplotypes.
Abstract
BACKGROUND AND AIMS
Populus alba is a thermophilic forest tree present in the Mediterranean basin. Its habitat is highly fragmented and its distribution range has been subject to long-term human interference, resulting in debate surrounding whether certain populations are native or exotic in origin. In particular, populations from the islands of Corsica and Sardinia are of uncertain origin. While populations of P. alba mainly reproduce sexually, clonal reproduction is also common. The aims of this study were to locate and molecularly characterize the poorly studied island populations of P. alba and compare these with samples from various spatial scales, in order to provide information on the genetic structure and phylogeography of this species. This information will provide evidence on whether the species is native to Sardinia, which is important for the development of conservation strategies.
METHODS
DNA extracts were obtained from the following P. alba trees: 159 from Sardinia, 47 from Ticino regional park (northern Italy), 15 acquired from an Italian Germoplasm Bank (IRC; Italian Reference Collection) and 28 from the Mediterranean basin (MB). Genetic polymorphisms were revealed at nuclear and chloroplast DNA (cpDNA) microsatellite loci, both at the island scale (Sardinia) and at broader scales, for comparative assessment of the genetic and genotypic diversity and phylogeography.
KEY RESULTS
Based on nuclear microsatellite loci, Sardinian white poplar consists of a small number of genets (26), each of which is represented by several ramets. Despite the uniqueness of the Sardinian haplotypes and the very low value of genetic diversity at the cpDNA level (vK = 0.15), the HT (0.60) and the AR (3.61) values, estimated at the nuclear level for Sardinia, were comparable with those of the other populations and collections.
CONCLUSIONS
The uniqueness of the cpDNA haplotypes, the prevalence of clonality and the restricted number of genets recorded suggest that Sardinian white poplar could be a floristic relict of the native flora of the island, which has spread through available habitats on the island mainly by means of vegetative propagation and human activities.
DOI: 10.1093/aob/mcn192
PubMed: 18845663
PubMed Central: PMC2712408
Affiliations:
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first="Ilaria" last="Zapelli">Ilaria Zapelli</name></author><author><name sortKey="Fossati, Tiziana" sort="Fossati, Tiziana" uniqKey="Fossati T" first="Tiziana" last="Fossati">Tiziana Fossati</name></author><author><name sortKey="Patrignani, Giuseppe" sort="Patrignani, Giuseppe" uniqKey="Patrignani G" first="Giuseppe" last="Patrignani">Giuseppe Patrignani</name></author><author><name sortKey="Camarda, Ignazio" sort="Camarda, Ignazio" uniqKey="Camarda I" first="Ignazio" last="Camarda">Ignazio Camarda</name></author><author><name sortKey="Sala, Francesco" sort="Sala, Francesco" uniqKey="Sala F" first="Francesco" last="Sala">Francesco Sala</name></author><author><name sortKey="Castiglione, Stefano" sort="Castiglione, Stefano" uniqKey="Castiglione S" first="Stefano" last="Castiglione">Stefano Castiglione</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:18845663</idno><idno 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xml:lang="fr">Italie</country><wicri:regionArea>Università degli Studi di Sassari, Dipartimento di Botanica ed Ecologia vegetale, Via Muroni 25, 07100 Sassari</wicri:regionArea><wicri:noRegion>07100 Sassari</wicri:noRegion></affiliation></author><author><name sortKey="Lupi, Renato" sort="Lupi, Renato" uniqKey="Lupi R" first="Renato" last="Lupi">Renato Lupi</name></author><author><name sortKey="Zapelli, Ilaria" sort="Zapelli, Ilaria" uniqKey="Zapelli I" first="Ilaria" last="Zapelli">Ilaria Zapelli</name></author><author><name sortKey="Fossati, Tiziana" sort="Fossati, Tiziana" uniqKey="Fossati T" first="Tiziana" last="Fossati">Tiziana Fossati</name></author><author><name sortKey="Patrignani, Giuseppe" sort="Patrignani, Giuseppe" uniqKey="Patrignani G" first="Giuseppe" last="Patrignani">Giuseppe Patrignani</name></author><author><name sortKey="Camarda, Ignazio" sort="Camarda, Ignazio" uniqKey="Camarda I" first="Ignazio" last="Camarda">Ignazio Camarda</name></author><author><name sortKey="Sala, Francesco" sort="Sala, Francesco" uniqKey="Sala F" first="Francesco" last="Sala">Francesco Sala</name></author><author><name sortKey="Castiglione, Stefano" sort="Castiglione, Stefano" uniqKey="Castiglione S" first="Stefano" last="Castiglione">Stefano Castiglione</name></author></analytic><series><title level="j">Annals of botany</title><idno type="eISSN">1095-8290</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Cell Nucleus (genetics)</term><term>Clone Cells (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Geography (MeSH)</term><term>Haplotypes (MeSH)</term><term>Italy (MeSH)</term><term>Mediterranean Region (MeSH)</term><term>Microsatellite Repeats (genetics)</term><term>Plastids (genetics)</term><term>Populus (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Clones cellulaires (MeSH)</term><term>Géographie (MeSH)</term><term>Haplotypes (MeSH)</term><term>Italie (MeSH)</term><term>Noyau de la cellule (génétique)</term><term>Plastes (génétique)</term><term>Populus (génétique)</term><term>Région méditerranéenne (MeSH)</term><term>Répétitions microsatellites (génétique)</term><term>Variation génétique (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Italy</term><term>Mediterranean Region</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cell Nucleus</term><term>Microsatellite Repeats</term><term>Plastids</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Noyau de la cellule</term><term>Plastes</term><term>Populus</term><term>Répétitions microsatellites</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Clone Cells</term><term>Genetic Variation</term><term>Geography</term><term>Haplotypes</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Clones cellulaires</term><term>Géographie</term><term>Haplotypes</term><term>Italie</term><term>Région méditerranéenne</term><term>Variation génétique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Italie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND AND AIMS</b></p><p>Populus alba is a thermophilic forest tree present in the Mediterranean basin. Its habitat is highly fragmented and its distribution range has been subject to long-term human interference, resulting in debate surrounding whether certain populations are native or exotic in origin. In particular, populations from the islands of Corsica and Sardinia are of uncertain origin. While populations of P. alba mainly reproduce sexually, clonal reproduction is also common. The aims of this study were to locate and molecularly characterize the poorly studied island populations of P. alba and compare these with samples from various spatial scales, in order to provide information on the genetic structure and phylogeography of this species. This information will provide evidence on whether the species is native to Sardinia, which is important for the development of conservation strategies.</p></div><div type="abstract" xml:lang="en"><p><b>METHODS</b></p><p>DNA extracts were obtained from the following P. alba trees: 159 from Sardinia, 47 from Ticino regional park (northern Italy), 15 acquired from an Italian Germoplasm Bank (IRC; Italian Reference Collection) and 28 from the Mediterranean basin (MB). Genetic polymorphisms were revealed at nuclear and chloroplast DNA (cpDNA) microsatellite loci, both at the island scale (Sardinia) and at broader scales, for comparative assessment of the genetic and genotypic diversity and phylogeography.</p></div><div type="abstract" xml:lang="en"><p><b>KEY RESULTS</b></p><p>Based on nuclear microsatellite loci, Sardinian white poplar consists of a small number of genets (26), each of which is represented by several ramets. Despite the uniqueness of the Sardinian haplotypes and the very low value of genetic diversity at the cpDNA level (vK = 0.15), the HT (0.60) and the AR (3.61) values, estimated at the nuclear level for Sardinia, were comparable with those of the other populations and collections.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>The uniqueness of the cpDNA haplotypes, the prevalence of clonality and the restricted number of genets recorded suggest that Sardinian white poplar could be a floristic relict of the native flora of the island, which has spread through available habitats on the island mainly by means of vegetative propagation and human activities.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18845663</PMID><DateCompleted><Year>2008</Year><Month>12</Month><Day>08</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1095-8290</ISSN><JournalIssue CitedMedium="Internet"><Volume>102</Volume><Issue>6</Issue><PubDate><Year>2008</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Annals of botany</Title><ISOAbbreviation>Ann Bot</ISOAbbreviation></Journal><ArticleTitle>The origin of clonal diversity and structure of Populus alba in Sardinia: evidence from nuclear and plastid microsatellite markers.</ArticleTitle><Pagination><MedlinePgn>997-1006</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/aob/mcn192</ELocationID><Abstract><AbstractText Label="BACKGROUND AND AIMS" NlmCategory="OBJECTIVE">Populus alba is a thermophilic forest tree present in the Mediterranean basin. Its habitat is highly fragmented and its distribution range has been subject to long-term human interference, resulting in debate surrounding whether certain populations are native or exotic in origin. In particular, populations from the islands of Corsica and Sardinia are of uncertain origin. While populations of P. alba mainly reproduce sexually, clonal reproduction is also common. The aims of this study were to locate and molecularly characterize the poorly studied island populations of P. alba and compare these with samples from various spatial scales, in order to provide information on the genetic structure and phylogeography of this species. This information will provide evidence on whether the species is native to Sardinia, which is important for the development of conservation strategies.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">DNA extracts were obtained from the following P. alba trees: 159 from Sardinia, 47 from Ticino regional park (northern Italy), 15 acquired from an Italian Germoplasm Bank (IRC; Italian Reference Collection) and 28 from the Mediterranean basin (MB). Genetic polymorphisms were revealed at nuclear and chloroplast DNA (cpDNA) microsatellite loci, both at the island scale (Sardinia) and at broader scales, for comparative assessment of the genetic and genotypic diversity and phylogeography.</AbstractText><AbstractText Label="KEY RESULTS" NlmCategory="RESULTS">Based on nuclear microsatellite loci, Sardinian white poplar consists of a small number of genets (26), each of which is represented by several ramets. Despite the uniqueness of the Sardinian haplotypes and the very low value of genetic diversity at the cpDNA level (vK = 0.15), the HT (0.60) and the AR (3.61) values, estimated at the nuclear level for Sardinia, were comparable with those of the other populations and collections.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The uniqueness of the cpDNA haplotypes, the prevalence of clonality and the restricted number of genets recorded suggest that Sardinian white poplar could be a floristic relict of the native flora of the island, which has spread through available habitats on the island mainly by means of vegetative propagation and human activities.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Brundu</LastName><ForeName>Giuseppe</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Università degli Studi di Sassari, Dipartimento di Botanica ed Ecologia vegetale, Via Muroni 25, 07100 Sassari, 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sort="Camarda, Ignazio" uniqKey="Camarda I" first="Ignazio" last="Camarda">Ignazio Camarda</name><name sortKey="Castiglione, Stefano" sort="Castiglione, Stefano" uniqKey="Castiglione S" first="Stefano" last="Castiglione">Stefano Castiglione</name><name sortKey="Fossati, Tiziana" sort="Fossati, Tiziana" uniqKey="Fossati T" first="Tiziana" last="Fossati">Tiziana Fossati</name><name sortKey="Lupi, Renato" sort="Lupi, Renato" uniqKey="Lupi R" first="Renato" last="Lupi">Renato Lupi</name><name sortKey="Patrignani, Giuseppe" sort="Patrignani, Giuseppe" uniqKey="Patrignani G" first="Giuseppe" last="Patrignani">Giuseppe Patrignani</name><name sortKey="Sala, Francesco" sort="Sala, Francesco" uniqKey="Sala F" first="Francesco" last="Sala">Francesco Sala</name><name sortKey="Zapelli, Ilaria" sort="Zapelli, Ilaria" uniqKey="Zapelli I" first="Ilaria" last="Zapelli">Ilaria Zapelli</name></noCountry><country name="Italie"><noRegion><name sortKey="Brundu, Giuseppe" sort="Brundu, Giuseppe" 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